PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf00500g01048.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family M-type_MADS
Protein Properties Length: 205aa    MW: 23066.4 Da    PI: 8.1851
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf00500g01048.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF58.86.8e-191361149
                              S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
                    SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                              k+i n+  r vtfskR +g++KKA+ELS+L +ae+a+i  s+ g+++ +
  Peinf101Scf00500g01048.1 13 KKIANEKSRAVTFSKRYKGVFKKASELSILSGAEIAIIFQSQAGNVFAF 61
                              6899*****************************************9887 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006622.778565IPR002100Transcription factor, MADS-box
SMARTSM004322.0E-25564IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.09E-23683IPR002100Transcription factor, MADS-box
PRINTSPR004044.1E-16727IPR002100Transcription factor, MADS-box
PfamPF003191.2E-181461IPR002100Transcription factor, MADS-box
PRINTSPR004044.1E-162742IPR002100Transcription factor, MADS-box
PRINTSPR004044.1E-164263IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 205 aa     Download sequence    Send to blast
MKKSQGRRKI EIKKIANEKS RAVTFSKRYK GVFKKASELS ILSGAEIAII FQSQAGNVFA  60
FGHPNPNVVI DRYLTDCGKS KAELEAEKQK KEIMTEEMKN KPIDEMGLEE LEDLMFALVE  120
LKKNVSMRAD ELAMINNSSM PSSSNSTLTT TNRFGIDEEE LLNQNFGFCS SSSIVPYDGF  180
NSRITEQEKE MAEIVKTSPF KKNIS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004231377.17e-52PREDICTED: agamous-like MADS-box protein AGL62
TrEMBLK4B2N77e-52K4B2N7_SOLLC; Uncharacterized protein
STRINGSolyc01g106700.2.12e-51(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21342252
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.16e-22AGAMOUS-like 62